GenBank to FASTA

Convert GenBank files to FASTA format, extracting DNA sequences

Tool Configuration
Configure the parameters for GenBank to FASTA

Paste the contents of one or more GenBank files. Input limit is 200,000,000 characters.

1

Prepare Your GenBank File

Paste the contents of your GenBank format file. You can include multiple records in a single file.

2

Execute Conversion

Click "Execute Tool" to extract DNA sequences and convert them to FASTA format.

3

Review Results

View the extracted sequences with DEFINITION lines as FASTA headers and sequence statistics.

4

Download FASTA File

Download the converted sequences in FASTA format for use in sequence analysis tools.

Use Cases
Common applications for the GenBank to FASTA tool

Quick Format Conversion

Quickly extract DNA sequences from GenBank files when you need just the sequence data without annotations.

Sequence Analysis Preparation

Prepare sequences for analysis tools that accept FASTA format but not GenBank format.

Batch Processing

Convert multiple GenBank records at once for downstream analysis or database submission.

Data Simplification

Remove complex annotations and metadata when working with sequence alignment or similarity search tools.